Kelly, Martinez, and the officers arrest Luis Hernandez, a baker, for a murder charge. But Detective Mike Roberts, as well as Detective Kelly, try to get him to confess to the robbery of four taxicabs so they can link him to the murder. Meanwhile, Sipowicz arrests a topless dancer for prostitution and she offers to help him get the owner of the bar who's laundering money for the mob. Laura questions Sylvia's ethics, who tries to protect her personal reputation and Sipowicz's verbal attacks on her. Also, Lt. Fancy and the rest of the squad welcomes the new administrative aide, a beautiful blond woman named Donna Abandando, whom the neurotic Detective Greg Medavoy finds irresistible.

Mike Roberts meets with Kelly in search of getting some bodyguard and/or P.I. work for himself after quitting the police force. Meanwhile, Laura feels someone is stalking her and gets Kelly to meet her new boyfriend, Dr. Schrager, who may be the stalker. Elsewhere, Sipowitz and Kelly deal with a woman whose boyfriend was a material witness and is afraid to identify the hit man because he's afraid the hit man's friends will kill her next. None of the detectives are too excited when Haverill sends them down to Times Square for uniform detail at a parade.

Internal Affairs begins to investigate Kelly and Sipowicz's arresting of the officers they caught robbing drug dealer's apartments, then they begin looking into Kelly's handling of the notebook that was part of Medavoy's case. Janice's murder trial continues where she takes the witness stand to give an emotional testimony about her reluctant involvement with the mob and is sent to prison with a two-year sentence. Meanwhile, Kelly and Sipowicz investigate a double murder.

Kelly works with a Chinese detective in the investigation of the murder of an off-duty cop in Chinatown. Lt. Fancy catches Donna and Madavoy in an embrace and warns both of them about relationships in the workplace. The abused woman Sipowicz helped out turns up dead and her husband is a suspect. Meanwhile, a tough new female detective, Adrianne Lesniak, transfers into the squad because of a relationship she had with an officer at her former precinct in the Bronx and begins to work with Sipowicz on his case.

Simone and Sipowicz investigate the race-related murder of a Puerto Rican teenager who was attacked while spray painting graffiti in Little Italy. Meanwhile, Medavoy meets Donna's former boyfriend, Harold, when he comes to the station to file a car vandalism report, while Donna makes a tough decision about her relationship with Medavoy. Also, Sylvia is mugged and she later tells Sipowicz a secret from her past about being raped as a teen.

Meadavoy and Lesniak pair up to identify who's launched a series of vicious attacks on a man. Meanwhile, Simone tries to locate a possible suspect in a series of rapes. Russell tries to maintain her sobriety and it's strongly tested when her parents domestic problems get out of hand. Also, Martinez finally gets out of the hospital and returns to duty. But in a final surprising twist, Lesniak tells Martinez that she likes him as friend only... because she happens to be gay.

Lesniak's preference of her lesbianism quickly gets around the precinct, which gives her mixed reactions. Meanwhile, Sipowicz clashes with Simone throughout their investigation of the senseless murder of two kids, which is only the start of a really bad day which also includes Sipowicz dealing with Sylvia's morning sickness, and Simone dealing with Russell who falls off the wagon.

Russell worries about her mother's pending grand jury trial for the intentional murder of her father. Meanwhile, Sipowicz and Simone search for the killer of a mobster's son, that reveals a family affair. The pompous lawyer of a suspect in another murder case impedes Medavoy and Russell's investigation and the erratic behavior of son of the victim doesn't help much either. Also, Martinez and Lesniak investigate another murder case that may be connected to Sipowicz and Simone's murder suspect who now may be on a killing rampage.

Fancy and his wife are pulled over and harassed by a racist police officer for a burned out taillight, and he and the precinct commander, Captain Bass, don't see eye to eye on the procedures followed during the stop. Meanwhile, Sipowicz has some unresolved issues to work out Andy Jr.'s death when he begins having a string of dreams involving his late son. At the same time, Sipowicz works with Simone on a rare night duty and gets a case involving trying to find the perpetrators of a bar robbery, while Simone locks horns with the conniving Detective Eddie Hazell who is seeking to derail Simone's investigation to take the credit for nabbing the robbers all by himself. Also, Medavoy, Martinez and Russell work together on a sting operation to catch two female con artist investors defrauding old and crippled women.

The detectives get a break in a case involving a police officer suspected of committing murder.

ADA Costas prepares for the trial against Cullinan, and chooses Sorenson to testify over her husband. A man is shot dead in his apartment, and his wife's story about Latinos looking for drugs doesn't add up.

A dismembered body is found in a barrel; the trail leads Andy and Danny to a mobster who denies knowledge; they later learn he's connected to another murder, his wife who disappeared years earlier.

A homeless guy Danny was trying to protect turns up dead. The DOA's father is concerned about the trust fund his sister will now inherit.

Sipowicz and Sorenson investigate the murder of an exotic dancer; Sipowicz and Medavoy act as elderly decoys to catch some street thieves attacking old people outside a local bank.

The squad is joined by Eddie Gibson who's been transferred from nightwatch. McDowell and Gibson investigate the murder of a woman with MS, while the other detectives investigate the killing of a Rikers corrections officer.

Sipowicz, Clark, Medavoy and Jones investigate the murder of an unassuming teenager. McDowell and Ortiz search for the person responsible for firing a stray bullet that killed a three-year-old girl.

IAB start interviewing the officers who were in the diary, and Sipowicz and Clark are blamed as rats. A social worker appears to have taken her own life. A former cop wants his ashes buried at the precinct.