Now that Caroline Reynolds has stepped down as president, she can no longer sign a pardon, so the brothers must immediately disappear, forever. At the pier Sarah realizes she's being tailed and pretends on the phone already to be on board, so they sail without her while she is arrested. Lincoln stops Michael from returning for her. A week later, an FBI bigwig offers C-note a lesser sentence for testimony against Mahone, even freedom and witness protection for his family- bingo. Fernando grabs Bellick's gun while looking for T-bag, but Bellick shows a crucifix to prove he has Maricruz. The scumbag enjoys his fortune with a lady of the street playing his Susan-Q. The brothers arrive at Cristobal, Panama. Meanwhile Malone's team deduces Scofield's tattoos refer to Michael's mother Christina, presumably dead, and he presumes his computer contained much info on Panama for a reason. The man in power grills Kim on a small boat, and decides to change the strategy. Mahone sees through FBI-colleague Wheeler. C-note is reunited with his family and released. The brothers have a fight, torn by guilt for too many innocent people suffering through their well-meaning deeds, then board a yacht, named- Christina. Mahone tells Kim he's not happy with the results as he remains separated from his family, but is told he now needs help to escape, and therefore must go to Mexico- to help T-bag.

Linc finds Michael is gone from their Christina Rose yacht after receiving Sucre's message (also intercepted by Mahone, who thinks to have found his way out); scary scumbag T-bag is in Panama City's Fin del Camino hotel with the money. A fire-cracker he pays a local boy to plant shows Michael Mahone's two plants on the plaza, but Bellick pulls his gun on him, accompanied by Fernando who denies sending the message. Scofield smells a trap and states their goals: money for Bellick, Maricruz for Sucre, T-bag for him, then reminds Fernando in private Maricruz is his legitimate priority, not revenge. Sarah Tancredi's trial proceeds, and the judge allows showing Michael's tape clearing her; her lawyer advises her to take a twelve-year plea, in effect nine years in hard security. When T-bag leaves, Mahone's two men tail him, followed by the escapee trio. Mahone is suddenly attacked by Lincoln who calls him the murderer of his dad. The trio surprises and disarms Mahone's duo which carries no FBI-identification, and next T-bag, but hears police sirens outside. After lining up his medals and putting on his uniform, Paul Kellerman shoots himself in the head, but his pistol jams; his sister insists it's a sign to make a new start in life. He goes to testify on Sarah's behalf. Instead of money, Fernando finds a girl shot, T-bag makes a run past Bellick while police enter; Michael and Sucre follow over the fire escape, a car slightly running into him causes T-bag to be caught again. He deals with Michael to trade his escape, without the money, for information but Scofield decides to dump him at the embassy. The monster finds a screw driver, stabs Fernando and thus causes a car crash, allowing him to run with his precious backpack. Sucre insists Michael run after him in a palm wood, till he makes a stand with a knife. A broken bottle allows a fight. In no time Michael has the knife at T-bag's throat, who taunts him but still gets stabbed- in the arm, so the police can easily take him in. . .